CDE Detailed Report
Disease: Unruptured Cerebral Aneurysms and Subarachnoid Hemorrhage
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CRF: Biospecimen Collection and Processing
Displaying 1 - 44 of 44
Subdomain Name: [php]
CRF: Biospecimen Collection and Processing
Displaying 1 - 44 of 44
| CDE ID | CDE Name | Variable Name | Definition | Short Description | Question Text | Permissible Values | Description | Data Type | Disease Specific Instructions | Disease Specific Reference | Population | Classification (e.g., Core) | Version Number | Version Date | CRF Name (CRF Module / Guidance) | Subdomain Name | Domain Name | Size | Input Restrictions | Min Value | Max Value | Measurement Type | External Id Loinc | External Id Snomed | External Id caDSR | External Id CDISC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C54753 | Specimen collection tube type | SpecimenCollectionTubTyp | Type of tube used for specimen collection | Type of tube used for specimen collectio | Type of collection tubes used | Other, specify;Polystyrene tubes;Polypropylene tubes;Coated in EDTA;Coated with citrate;Coated with heparin;No coating | Other, specify;Polystyrene tubes;Polypropylene tubes;Coated in EDTA;Coated with citrate;Coated with heparin;No coating | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55746 | Specimen surround dry ice shipment indicator | SpcmnSurrndDryIceShipInd | The indicator related to whether the specimen was surrounded by dry ice for shipping | The indicator related to whether the specimen was surrounded by dry ice for shipping | Samples surrounded by dry ice to maintain temperature -80C or below throughout shipment: | No;Yes | No;Yes | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55327 | Specimen serial collected indicator | SampleSerialCollectInd | Indicator of whether or not serial samples were collected over time | Indicator of whether or not serial samples were collected over time | Serial specimens collected (over time): | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C01701 | Lab specimen collection date and time | LabSpecmnCollDateTime | Date (and time if applicable and known) when the specimen was collected | Date (and time if applicable and known) when the specimen was collected | Date of sample collection | Date or Date & Time |
Relative to disease/event onset |
Adult;Pediatric | Core | 3.00 | 2013-07-25 08:54:08.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
2004004 | ||||||||||
| C55349 | Microdialysis cerebral Ictus monitoring interval | MicrodCrbrlIctusMonitorIntrvl | The period of time elapsed between ictus and monitoring for cerebral microdialysis | The period of time elapsed between ictus and monitoring for cerebral microdialysis | Time from ictus to monitoring: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 1.00 | 2017-04-12 17:44:54.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C54754 | Specimen collection tube other text | SpecimenCollectionTubOTH | The free-text field related to other tube for specimen collection | The free-text field related to other tube for specimen collectio | Specify | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55747 | Specimen insulate shipment box indicator | SpcmnInsulateShipBoxInd | The indicator related to whether the specimen insulated in a shipment box | The indicator related to whether the specimen insulated in a shipment box | Use insulated bio-shipment box: | No;Yes | No;Yes | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55329 | Specimen storage barcode system used indicator | SpecStrgBarcdSysUsedInd | The indicator related to whether a specimen storage barcode system was used | The indicator related to whether a specimen storage barcode system was used | Samples torage bar code system (automated date/time) method used: | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C14517 | Device manufacturer name | DevManufName | The company responsible for development of the device | The name of the manufacturer of the device that was placed in the subject's body | Manufacturer: | Alphanumeric |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-08-28 16:08:00.453 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55352 | Microdialysate source type | MicrodiaSourcTyp | The free-text field to specify the type of microdialysate specimen source | The free-text field to specify the type of microdialysate specimen source | Composition and source of the microdialysate: | Alphanumeric |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55003 | Specimen centrifugation revolutions per minute value | SpecCentrifugationRPMVal | The value related to revoluntions per minute in a centrifuge | The value related to revoluntions per minute in a centrifug | RPM | Numeric Values | Adult;Pediatric | Core | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C55338 | Specimen freeze thaw cycle prior biomarker assay number | SpcmnFrzThwCycPriorBiomAssaNum | The number of freeze thaw cycles the sample underwent prior to the biomarker assay | The number of freeze thaw cycles the sample underwent prior to the biomarker assay | Number of freeze/thaw cycles the sample went through prior to biomarker assay: | Numeric Values | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C54743 | Specimen biologic source type | SpecmnBioSourcTyp | The type of biologic specimen collection source | The type of biologic specimen collection sourc | Sample source | Biological tissue;Biological fluid;Unknown | Biological tissue;Biological fluid;Unknown | Alphanumeric | Adult;Pediatric | Core | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55353 | Microdialysate composition type text | MicrodiaCompTypTxt | The free-text field to specify the composition of microdialysate specimen | The free-text field to specify the composition of microdialysate specimen | Composition and source of the microdialysate: | Alphanumeric |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] | 500 |
Free-Form Entry |
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| C55004 | Specimen centrifugation temperature value | SpecCentrifugationTempVal | The value related to temperature in a centrifuge | The value related to temperature in a centrifug | Temperature | Numeric Values | Adult;Pediatric | Core | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
degrees celsius | |||||||||||
| C55340 | Specimen selective inhibitor used indicator | SpcmnSelecvInhibitUsedInd | Indicator of whether or not selective inhibitors were used on the sample | Indicator of whether or not selective inhibitors were used on the sample | Selective inhibitors used (depending on target analyte): | No;Yes | No;Yes | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C54746 | Specimen not collected reason | SpecmnNotCollectRsn | The reason the specimen sample was excluded | The reason the specimen sample was exclude | Reason(s) sample excluded | Nervous system neoplasm;Nervous system infection;Target organ infection;Paraneoplastic conditions;Demyelinated conditions;Inflammatory conditions;Malignancy;Liver failure;Renal failure | Nervous system neoplasm;Nervous system infection;Target organ infection;Paraneoplastic conditions;Demyelinated conditions;Inflammatory conditions;Malignancy;Liver failure;Renal failure | Alphanumeric |
Certain conditions may alter biomarker composition and inclusion/exclusion should be carefully considered |
Adult;Pediatric | Core | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Multiple Pre-Defined Values Selected |
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| C55357 | Microdialysis cerebral analyte glucose measurement | MicrodiaCrbrlAnalytGluMeasr | The value of glucose in in the cerebral microdialysis analyte | The value of glucose in in the cerebral microdialysis analyte | Glucose: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C55005 | Specimen centrifugation duration | SpecCentrifugationDur | The duration related to centrifugation | The duration related to centrifugatio | Duration | Numeric Values | Adult;Pediatric | Core | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
second | |||||||||||
| C55341 | Specimen selective inhibitor used type | SpcmnSelecvInhibitUsedTyp | The type of selective inhibitors that were used on the sample | The type of selective inhibitors that were used on the sample | If YES | Protease inhibitor;Rnase inhibitor;Unknown | Protease inhibitor;Rnase inhibitor;Unknown | Alphanumeric | Adult;Pediatric | Supplemental | 3.10 | 2022-08-04 10:24:40.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C54747 | Specimen acquisition anatomical site | SpecmnAcquisAnatSite | The anatomical site related to the site of blood, serum or plasma samples | The anatomical site related to the site of blood, serum or plasma sample | Site of sample acquisition (blood/serum/plasma samples) | Arterial blood source;Venous blood source;Peripheral venipucture;Vascular access;Unknown | Arterial blood source;Venous blood source;Peripheral venipucture;Vascular access;Unknown | Alphanumeric |
Vascular access includes arterial or central venous catheters |
Adult;Pediatric | Core | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Multiple Pre-Defined Values Selected |
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| C55358 | Microdialysis cerebral analyte pyruvate measurement | MicrodiaCrbrlAnalytPyruMeasr | The value of pyruvate in in the cerebral microdialysis analyte | The value of pyruvate in in the cerebral microdialysis analyte | Pyruvate: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C55006 | Specimen time collection process interval | SpecTimeCollProcIntrvl | The interval from the specimen collection and initial processing | The interval from the specimen collection and initial processin | Time lapse between sample collection and initial processing | Numeric Values | Adult;Pediatric | Core | 1.00 | 2017-04-17 15:05:54.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
minute | |||||||||||
| C55343 | Specimen hazardous triple packaged ship indicator | SpcmnHzrdTrplPackShipInd | The indicator related to whether the hazardous specimen was triple packaged for shipping | The indicator related to whether the hazardous specimen was triple packaged for shipping | Potentially hazardous biological materials are triple packaged to withstand leakage, shocks, temperature and pressure changes that occur during handling and transportation: | No;Yes | No;Yes | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C54748 | Specimen baseline collection indicator | SpecmnBaselineCollectInd | The indicator related to baseline specimen being collected | The indicator related to baseline specimen being collecte | Baseline specimen collected | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
Collected within 12 hours of initial hospital presentation |
Adult;Pediatric | Core | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55359 | Microdialysis cerebral analyte lactate measurement | MicrodiaCrbrlAnalytLactMeasr | The value of lactate in in the cerebral microdialysis analyte | The value of lactate in in the cerebral microdialysis analyte | Lactate: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C55007 | Biospecimen collection other text | BiospecCollOTH | The free-text field related to other type of biospecimen collection | The free-text field related to other type of biospecimen collection | Other, specify | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-17 15:09:42.0 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55344 | Microdialysis cerebral probe location anatomic site | MicrodiaCrbrlPrbAnatSite | Free-text field to describe the location of the probe for cerebral microdialysis specimens | Free-text field to describe the location of the probe for cerebral microdialysis specimens | Location of probe placement: | Alphanumeric |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C54749 | Cerebrospinal fluid collection method type | CSFCollectMethoTyp | The method related to cerebrospinal fluid (CSF) being collected | The method related to cerebrospinal fluid (CSF) being collecte | Method of CSF acquisition | Collection catheter;Lumbar Puncture;Other, specify | Collection catheter;Lumbar Puncture;Other, specify | Alphanumeric |
Collection catheters include external ventricular and lumbar drain catheters. Other mehods can include VP shunt tap. |
Adult;Pediatric | Core | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55360 | Microdialysis cerebral analyte lactate pyruvate ratio value | MicrdiaCrbrlAnlytLactPyrRatVal | The ratio of lactate to pyruvate in the cerebral microdialysis analyte | The ratio of lactate to pyruvate in the cerebral microdialysis analyte | L/P ratio: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C55008 | Biospecimen collection type | BioSpecCollectTyp | The type related to biospecimen collection | The type related to biospecimen collection | Type of sample stored | Plasma;Serum;Buffy coat;Other, specify | Plasma;Serum;Buffy coat;Other, specify | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-17 15:12:20.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Multiple Pre-Defined Values Selected |
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| C55345 | Microdialysis cerebral probe number | MicrodiaCrbrlPrbNum | The number of probes used for cerebral microdialysis specimens | The number of probes used for cerebral microdialysis specimens | Number of probes: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C54750 | Cerebrospinal fluid collection method other text | CSFCollectMethoOTH | The free-text field related to other for method related to cerebrospinal fluid (CSF) being collected | The free-text field related to other for method related to cerebrospinal fluid (CSF) being collecte | Specify | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55361 | Microdialysis cerebral novel target analyte indicator | MicrdiaCrbrlNovlTargAnalytInd | The indicator related to whether there were any novel target analytes in the cerebral microdialysis | The indicator related to whether there were any novel target analytes in the cerebral microdialysis | Any novel target analytes? | No;Yes | No;Yes | Alphanumeric |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55009 | Specimen storage temperature value | SpecStorTempVal | The temperature value for the specimen being stored | The temperature value for the specimen being store | Sample storage temperature | Numeric Values | Adult;Pediatric | Core | 1.00 | 2017-04-17 15:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
degrees celsius | |||||||||||
| C55346 | Microdialysis cerebral probe molecular weight limit value | MicrodiaCrbrlPrbMolWtLimVal | The field to specify the molecular weight limit for probes used for cerebral microdialysis specimens | The field to specify the molecular weight limit for probes used for cerebral microdialysis specimens | Probe molecular weight cut-off: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C54751 | Cerebrospinal fluid collection anatomic site | CSFCollectAnatSite | The anatomic site related to collection of cerebrospinal fluid (CSF) | The anatomic site related to collection of cerebrospinal fluid (CSF | Site of CSF acquisition | Ventricular cistern;Lumbar cistern;Other, specify | Ventricular cistern;Lumbar cistern;Other, specify | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55362 | Multiplex platform normalization technique text | MultiplxPlatNormTechTxt | Free-text field to describe normalization techniques for multiplex platforms | Free-text field to describe normalization techniques for multiplex platforms | Normalization techniques: | Alphanumeric |
For multiplex platforms (proteomics, metabolomics, luminex assays) |
Adult;Pediatric | Exploratory | 3.00 | 2013-07-16 14:01:43.01 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55323 | Specimen normal control collected indicator | SpcmnNrmlCtrlCollectInd | Indicator of whether or not normal or control samples were collected | Indicator of whether or not normal or control samples were collected | Normal/control samples collected: | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55347 | Microdialysis cerebral probe membrane length measurement | MicrodiaCrbrlPrbMembLengtMeasr | The field to specify the membrane length for probes used for cerebral microdialysis specimens | The field to specify the membrane length for probes used for cerebral microdialysis specimens | Membrane length: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.10 | 2022-08-04 10:26:34.0 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
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| C54752 | Cerebrospinal fluid collection anatomic site other text | CSFCollectAnatSiteOTH | The free-text field related to other anatomic site related to collection of cerebrospinal fluid (CSF) | The free-text field related to other anatomic site related to collection of cerebrospinal fluid (CSF | Specify | Alphanumeric | Adult;Pediatric | Core | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | [php] | [php_1] | 255 |
Free-Form Entry |
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| C55363 | Multiplex platform batch effect indicator | MultiplxPlatBatchEffInd | Indicator for whether there was batch effect for multiplex platforms | Indicator for whether there was batch effect for multiplex platforms | Presence of batch-effect? | No;Yes | No;Yes | Alphanumeric |
For multiplex platforms (proteomics, metabolomics, luminex assays) |
Adult;Pediatric | Exploratory | 3.00 | 2013-07-16 14:01:43.01 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55325 | Specimen convalescent collected indicator | SpcmnConvalesCollectInd | Indicator of whether or not convalescent samples were collected | Indicator of whether or not convalescent samples were collected | Convalescent samples collected: | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | [php] | [php_1] |
Single Pre-Defined Value Selected |
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| C55348 | Device model number | DevModelNum | The model number for the device used | The model number for the device used | Model #: | Numeric Values |
For cerebral microdialysis specimens |
Adult;Pediatric | Supplemental | 3.00 | 2013-08-28 16:08:00.453 | Biospecimen Collection and Processing | [php] | [php_1] |
Free-Form Entry |
