CDE Detailed Report

Disease: system
Subdomain Name: Laboratory Tests and Biospecimens%2FBiomarkers
CRF: files

Displaying 151 - 166 of 166
CDE ID CDE Name Variable Name Definition Short Description Question Text Permissible Values Description Data Type Disease Specific Instructions Disease Specific Reference Population Classification (e.g., Core) Version Number Version Date CRF Name (CRF Module / Guidance) Subdomain Name Domain Name Size Input Restrictions Min Value Max Value Measurement Type External Id Loinc External Id Snomed External Id caDSR External Id CDISC
C19895 Symptom presentation toxin supplement drug exposure text SymptmPresentExpToxSuppDruText Exposure to toxins, supplements, and drugs participant/ subject shows at presentation Exposure to toxins, supplements, and drugs participant/ subject shows at presentation Exposure to toxins, supplements, or drugs (and relationship between exposue and biopsy acquisitions). Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations 255

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C19991 Immunohistochemistry protein aggregate myopath panel stain type IHCProAggMyoPanImmStainTyp Type of protein aggregate myopathy panel used Type of protein aggregate myopathy panel used Protein aggregate myopathy panel Desmin;Myotilin;aB crystallin;Ubiquitin Desmin;Myotilin;aB crystallin;Ubiquitin Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19927 Biopsy and autopsy targetoid fibers estimated percentage value BpApTargetFibEstCt Targetoid fibers estimated percentage value Targetoid fibers estimated percentage value Moderate (present in:) Numeric Values No references available Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

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 0 100 percent
C12261 Biopsy and autopsy inflammatory cell type BpApInflamCellTyp Type of inflammatory cells identified Type of inflammatory cells identifie Inflammatory cells identified Lymphocytes;Neutrophils;Macrophages;Eosinophils;Microorganisms Lymphocytes;Neutrophils;Macrophages;Eosinophils;Microorganisms Alphanumeric

Only answered if "Inflammatory cells identified" is answered for "Inflammation". Choose all that apply.

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Multiple Pre-Defined Values Selected
C19959 Immunohistochemistry laminin alpha2 merosin 80 status IHCLaminAlp2Meros80Stat The status of Laminin a2/Merosin (80 kDa) in immunohistochemistry The status of Laminin a2/Merosin (80 kDa) in immunohistochemistry Laminin a2/Merosin (80 kDa) Absent;Reduced;Normal Absent;Reduced;Normal Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19970 Immunohistochemistry collagen VI status IHCCollagenVIStat The status of collagen VI in immunohistochemistry The status of collagen VI in immunohistochemistry Collagen VI Absent;Reduced;Normal Absent;Reduced;Normal Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19906 Basophilic fibers presence status BasoFibPresStat Presence of basophilic fibers Presence of basophilic fibers Basophilic fibers, large nuclei Absent;Present Absent;Present Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C12231 Laboratory name LabName Name of laboratory where assessment was performed Name of laboratory where assessment was performed Name of laboratory where pathology was performed Alphanumeric

Record the laboratory name where pathology was performed

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations 255

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C19938 Blood vessel deposits amyloid suggestive status BldVessDeposSuggAmyStat The status of blood vessel deposits suggestive of amyloid The status of blood vessel deposits suggestive of amyloid Blood vessel deposits suggestive of amyloid Absent;Present Absent;Present Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C12524 Inflammation severity status InflamSeverStat Severity of Inflammation muscle diagnostic abnormalities Severity of Inflammation muscle diagnostic abnormalities Inflammation Mild;Moderate;Severe Mild;Moderate;Severe Alphanumeric

No instructions available

 No references available Adult Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C17904 Biopsy and autopsy pathological inclusions text BpApPathlgyInclTxt Text describing pathological inclusions (if any) Indicator of pathological inclusions (if any) Describe any pathological inclusions noted Alphanumeric

No instructions available

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations 255

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C19981 Immunohistochemistry CD20 presence status IHCCD20PresStat The status of the presence of CD20 in immunohistochemistry The status of the presence of CD20 in immunohistochemistry CD20 Absent;Present Absent;Present Alphanumeric

If present; specify the percent of lymphocytes

 Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19917 Biopsy and autopsy cytochrome oxidate negative fibers status BpApCOXNegFibStat Cytochrome oxidate (COX) negative fibers status in biopsy Cytochrome oxidate (COX) negative fibers status in biopsy COX-negative fibers Absent;Sparse;Moderate Absent;Sparse;Moderate Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C20326 Biopsy autopsy excessive glycogen status BpApExessGlycoStat The status related to glycogen storage pathology which involves excess PAS+ material that is easily identifiable on light microscopy and is evident on other stains including H and E. Mild glycogen storage pathology is difficult to determine at the light microscopic level and may only be evident on PAS stain or electron microscopy The status related to glycogen storage pathology which involves excess PAS+ material that is easily identifiable on light microscopy and is evident on other stains including H and E. Mild glycogen storage pathology is difficult to determine at the light microscopic level and may only be evident on PAS stain or electron microscop Excessive glycogen Absent;Mild;Marked Absent;Mild;Marked Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-18 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C12247 Biopsy and Autopsy tissue collection method type BpApTissCollMethdTyp The type of method used for collection of the tissue specimen The type of method used for collection of the tissue specimen Biopsy method Punch biopsy;Blister biopsy;Open biopsy;Open;Needle Punch biopsy;Blister biopsy;Open biopsy;Open;Needle Alphanumeric

No instructions available

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19949 Biopsy and autopsy additional observation text BpApAdditionObservText The free-text field for recording additional observations about the biopsy or autopsy being performed The free-text field for recording additional observations about the biopsy or autopsy being performe Additional observations Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens%2FBiomarkers Assessments and Examinations 4000

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