CDE Detailed Report

Disease: system
Subdomain Name: Laboratory Tests and Biospecimens/Biomarkers
CRF: files

Displaying 151 - 166 of 166
CDE ID CDE Name Variable Name Definition Short Description Question Text Permissible Values Description Data Type Disease Specific Instructions Disease Specific Reference Population Classification (e.g., Core) Version Number Version Date CRF Name (CRF Module / Guidance) Subdomain Name Domain Name Size Input Restrictions Min Value Max Value Measurement Type External Id Loinc External Id Snomed External Id caDSR External Id CDISC
C19958 Immunohistochemistry congenital muscular dystrophy Limb-Girdle muscular dystrophy other stain type IHCOthStainLimGirdCMDTyp Type of other stains used for limb girdle or CMD Type of other stains used for limb girdle or CMD Other stains for limb girdle or congenital muscular dystrophy Laminin a2 /Merosin (300 kDa);Laminin a2/Merosin (80- kDa);Alpha dystroglycan (VIA4);Alpha dystroglycan (IIH);Beta dystroglycan;Beta sarcoglycan;Alpha sarcoglycan;Delta sarcoglycan;Gamma sarcoglycan;Dysferlin;Emerin;Collagen VI;Caveolin 3;Integrin a7;nNOS Laminin a2 /Merosin (300 kDa);Laminin a2/Merosin (80- kDa);Alpha dystroglycan (VIA4);Alpha dystroglycan (IIH);Beta dystroglycan;Beta sarcoglycan;Alpha sarcoglycan;Delta sarcoglycan;Gamma sarcoglycan;Dysferlin;Emerin;Collagen VI;Caveolin 3;Integrin a7;nNOS Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19969 Immunohistochemistry emerin status IHCEmerinStat The status of Emerin in immunohistochemistry The status of Emerin in immunohistochemistry Emerin Absent;Normal Absent;Normal Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19905 Necrosis severity status NecroSeverStat Severity of the necrosis muscle diagnostic abnormalities Severity of the necrosis muscle diagnostic abnormalities Necrosis Mild;Moderate;Severe Mild;Moderate;Severe Alphanumeric

No instructions available

 No references available Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C12230 Tissue specimen collection date and time TissSpecmnCollctnDateTime Date (and time if applicable and known) when the tissue specimen was collected Date when the tissue specimen was collected Date of tissue collection Date or Date & Time

Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, compl

 No references available Adult;Pediatric Core 3.00 2013-07-25 08:54:08.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Free-Form Entry
C19937 Biopsy and autopsy lobulated fibers estimated percentage value BpApLobulFibEstCt Lobulated fibers estimated percentage value Lobulated fibers estimated percentage value Moderate (present in:) Numeric Values No references available Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Free-Form Entry

 0 100 percent
C12521 Specimen type 2 fiber muscle biopsy percent result number SpecTyp2FibMuscBiopPctResltNum Result for type 2 fiber muscle biopsy percent Result for type 2 fiber muscle biopsy percent Numeric Values

Only record Type 2 fiber percentage if Type 2 predominance is completed

 No references available Adult Supplemental 3.00 2013-07-25 08:54:08.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

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C19980 Immunohistochemistry CD8 percentage value IHCCD8PercentVal Percent value of CD8 Percent value of CD8 Present in Numeric Values Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Free-Form Entry

 0 100 percent
C19916 Biopsy and autopsy ragged red fibers status BpApRagRedFibStat Ragged red fibers status in biopsy Ragged red fibers status in biopsy Ragged red fibers Absent;Sparse;Moderate Absent;Sparse;Moderate Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C12243 Microscopy epon embedded tissue abnormality type MicscpyEponEmbedTissAbnrmlyTyp Type of microscopy employed to view abnormalities in epon-embedded tissue specimen Type of microscopy employed to view abnormalities in epon-embedded tissue specimen Abnormalities seen on Light microscopy (Toluidine blue staining);Electron microscopy;Both - light microscopy and electron microscopy Light microscopy (Toluidine blue staining);Electron microscopy;Both - light microscopy and electron microscopy Alphanumeric

No instructions available

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19948 Biopsy and autopsy myotentinous insertion sites status BpApMyotentInsertSiteStat The status of myotentinous insertion sites The status of myotentinous insertion sites Myotentinous inseriton sites Absent;Present Absent;Present Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C17903 Biopsy and autopsy abnormalities on immunohistochemistry text BpApAbnrmlImmhistchmclTxt Text regarding abnormalities on immunohistochemistry Text regarding abnormalities on immunohistochemistry Other abnormalities noted on immunohistochemistry Alphanumeric

No instructions available

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations 255

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C19895 Symptom presentation toxin supplement drug exposure text SymptmPresentExpToxSuppDruText Exposure to toxins, supplements, and drugs participant/ subject shows at presentation Exposure to toxins, supplements, and drugs participant/ subject shows at presentation Exposure to toxins, supplements, or drugs (and relationship between exposue and biopsy acquisitions). Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations 255

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C19991 Immunohistochemistry protein aggregate myopath panel stain type IHCProAggMyoPanImmStainTyp Type of protein aggregate myopathy panel used Type of protein aggregate myopathy panel used Protein aggregate myopathy panel Desmin;Myotilin;aB crystallin;Ubiquitin Desmin;Myotilin;aB crystallin;Ubiquitin Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
C19927 Biopsy and autopsy targetoid fibers estimated percentage value BpApTargetFibEstCt Targetoid fibers estimated percentage value Targetoid fibers estimated percentage value Moderate (present in:) Numeric Values No references available Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Free-Form Entry

 0 100 percent
C12261 Biopsy and autopsy inflammatory cell type BpApInflamCellTyp Type of inflammatory cells identified Type of inflammatory cells identifie Inflammatory cells identified Lymphocytes;Neutrophils;Macrophages;Eosinophils;Microorganisms Lymphocytes;Neutrophils;Macrophages;Eosinophils;Microorganisms Alphanumeric

Only answered if "Inflammatory cells identified" is answered for "Inflammation". Choose all that apply.

 No references available Adult;Pediatric Supplemental 3.00 2013-07-24 11:38:01.2 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Multiple Pre-Defined Values Selected
C19959 Immunohistochemistry laminin alpha2 merosin 80 status IHCLaminAlp2Meros80Stat The status of Laminin a2/Merosin (80 kDa) in immunohistochemistry The status of Laminin a2/Merosin (80 kDa) in immunohistochemistry Laminin a2/Merosin (80 kDa) Absent;Reduced;Normal Absent;Reduced;Normal Alphanumeric Adult;Pediatric Supplemental 1.00 2015-02-09 00:00:00.0 Muscle Biopsies and Autopsy Tissue Laboratory Tests and Biospecimens/Biomarkers Assessments and Examinations

Single Pre-Defined Value Selected
CSV