CDE Detailed Report
Disease: Stroke
Subdomain Name: Laboratory Tests and Biospecimens/Biomarkers
CRF: Biospecimen Collection and Processing
Displaying 51 - 79 of 79
Subdomain Name: Laboratory Tests and Biospecimens/Biomarkers
CRF: Biospecimen Collection and Processing
Displaying 51 - 79 of 79
| CDE ID | CDE Name | Variable Name | Definition | Short Description | Question Text | Permissible Values | Description | Data Type | Disease Specific Instructions | Disease Specific Reference | Population | Classification (e.g., Core) | Version Number | Version Date | CRF Name (CRF Module / Guidance) | Subdomain Name | Domain Name | Size | Input Restrictions | Min Value | Max Value | Measurement Type | External Id Loinc | External Id Snomed | External Id caDSR | External Id CDISC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C58724 | Specimen hemolyzed indicator | SpcmnHemolyzInd | Indicate whether the sample was hemolyzed (Gross hemolysis, microscope not required) | Indicate whether the sample was hemolyzed (Gross hemolysis, microscope not required) | Was sample hemolyzed (Gross hemolysis, microscope not required) | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
Choose one |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-07 16:43:52.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55340 | Specimen selective inhibitor used indicator | SpcmnSelecvInhibitUsedInd | Indicator of whether or not selective inhibitors were used on the sample | Indicator of whether or not selective inhibitors were used on the sample | Selective inhibitors used (depending on target analyte): | No;Yes | No;Yes | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55357 | Microdialysis cerebral analyte glucose measurement | MicrodiaCrbrlAnalytGluMeasr | The value of glucose in in the cerebral microdialysis analyte | The value of glucose in in the cerebral microdialysis analyte | Glucose: | Numeric Values |
"For cerebral microdialysis specimens mmol/l" |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58745 | Specimen cooler than room temperature indicator | SpcmnCoolerRoomTempInd | Indicate whether the specimen was kept cooler than room temperature | Indicate whether the specimen was kept cooler than room temperature | Sample kept cooler than room temperature | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:37:29.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C01712 | Lab specimen type | LabSpecmnTyp | Type of specimen collected for the laboratory test | Type of specimen collected for the laboratory test | Type of sample | Venous blood - serum;Venous blood - plasma;Venous blood - platelets;Venous blood - buffy coat;Venous blood - whole;Arterial blood - serum;Arterial blood - plasma;Arterial blood - platelets;Arterial blood - buffy coat;Arterial blood - whole;Newborn cord blood;Urine;CSF;Buccal swab;Brain tissue;Saliva;Amniotic fluid;Placenta;Other, specify;Blood | Venous blood - serum;Venous blood - plasma;Venous blood - platelets;Venous blood - buffy coat;Venous blood - whole;Arterial blood - serum;Arterial blood - plasma;Arterial blood - platelets;Arterial blood - buffy coat;Arterial blood - whole;Newborn cord blood;Urine;Cerebral spinal fluid;Buccal swab;Brain tissue;Saliva;Amniotic fluid;Placenta;Other, specify;Blood | Alphanumeric |
Choose one |
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples; Rai, A.J., Proteomics 2005, 5, 3262-3277. | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-20 10:21:25.65 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58407 | Blood collection tube volume value | BloodCollectTubeVolVal | Volume of blood collection tube | Volume of blood collection tube | Volume of collection tube | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2018-01-15 15:14:06.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
1 | 1000 | milliliters | |||||||
| C54754 | Specimen collection tube other text | SpecimenCollectionTubOTH | The free-text field related to other tube for specimen collection | The free-text field related to other tube for specimen collectio | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C58735 | Needle gauge size type | NeedleGaugeSizeTyp | Indicate the needle gauge size | Indicate the needle gauge size | Needle gauge size | 16 gauge;18 gauge;20 gauge;Unknown;Other, specify | 16 gauge;18 gauge;20 gauge;Unknown;Other, specify | Alphanumeric |
Choose one |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 12:18:08.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55341 | Specimen selective inhibitor used type | SpcmnSelecvInhibitUsedTyp | The type of selective inhibitors that were used on the sample | The type of selective inhibitors that were used on the sample | If YES | Protease inhibitor;Rnase inhibitor;Unknown | Protease inhibitor;Rnase inhibitor;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.10 | 2022-08-04 10:24:40.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55358 | Microdialysis cerebral analyte pyruvate measurement | MicrodiaCrbrlAnalytPyruMeasr | The value of pyruvate in in the cerebral microdialysis analyte | The value of pyruvate in in the cerebral microdialysis analyte | Pyruvate: | Numeric Values |
"For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58746 | Specimen centrifugation date and time | SpecCentrifPerfrmdDateTime | Date (and time if applicable and known) when the specimen was centrifuged | Date (and time if applicable and known) when the specimen was centrifuged | Time sample centrifuged | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:43:47.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C14517 | Device manufacturer name | DevManufName | The company responsible for development of the device | The name of the manufacturer of the device that was placed in the subject's body | Manufacturer: | Alphanumeric |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-08-28 16:08:00.453 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C58426 | Biomarker specimen collected aliquot number | BiomrkSpecCollectAliquotNum | The number of aliquots made for specimens collected from the participant/subject for biomarkers | The number of aliquots made for specimens collected from the participant/subject for biomarker | Number of Aliquots | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-06-06 11:44:03.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55003 | Specimen centrifugation revolutions per minute value | SpecCentrifugationRPMVal | The value related to revoluntions per minute in a centrifuge | The value related to revoluntions per minute in a centrifug | RPM | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58736 | Needle gauge size type other text | NeedleGaugeSizeTypOTH | The free-text field related to 'Needle gauge size type' specifying other text | The free-text field related to 'Needle gauge size type' specifying other text | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 12:28:36.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C55343 | Specimen hazardous triple packaged ship indicator | SpcmnHzrdTrplPackShipInd | The indicator related to whether the hazardous specimen was triple packaged for shipping | The indicator related to whether the hazardous specimen was triple packaged for shipping | Potentially hazardous biological materials are triple packaged to withstand leakage, shocks, temperature and pressure changes that occur during handling and transportation: | No;Yes | No;Yes | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55359 | Microdialysis cerebral analyte lactate measurement | MicrodiaCrbrlAnalytLactMeasr | The value of lactate in in the cerebral microdialysis analyte | The value of lactate in in the cerebral microdialysis analyte | Lactate: | Numeric Values |
"For cerebral microdialysis specimens mmol/l" |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58747 | Specimen freezing date and time | SpcmnFreezDateTime | Date (and time if applicable and known) when the specimen was frozen | Date (and time if applicable and known) when the specimen was frozen | Date and time of sample freezing | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:55:56.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C18731 | Lab test other text | LabTestOTH | The free-text field related to 'Lab test name' specifying other text. Name representing the lab test performed on body fluid(s) and tissues. Test names are typically comprised of the analyte name, properties (%, Ratio, etc.), the type of body fluid tested and any special instructions | The free-text field related to 'Lab test name' specifying other text. Name representing the lab test performed on body fluid(s) and tissues. Test names are typically comprised of the analyte name, properties (%, Ratio, etc.), the type of body fluid tested and any special instruction | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2014-05-27 13:34:46.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 4000 |
Free-Form Entry |
2003746 | ||||||||
| C58427 | Biomarker specimen collected aliquot volume value | BiomrkSpecCollectAliquotVolVal | The volume per aliquot for pecimens collected from the participant/subject for biomarkers | The volume per aliquot for pecimens collected from the participant/subject for biomarker | Volume of Aliquots (uL): | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.10 | 2022-08-04 10:29:56.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55004 | Specimen centrifugation temperature value | SpecCentrifugationTempVal | The value related to temperature in a centrifuge | The value related to temperature in a centrifug | Temperature | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
degrees celsius | |||||||||
| C58737 | Blood collection tube number | BloodCollectTubeNum | Enter the number of collection tubes used | Enter the number of collection tubes used | Number of collection tubes used | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 12:40:44.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
0 | 999 | ||||||||
| C55344 | Microdialysis cerebral probe location anatomic site | MicrodiaCrbrlPrbAnatSite | Free-text field to describe the location of the probe for cerebral microdialysis specimens | Free-text field to describe the location of the probe for cerebral microdialysis specimens | Location of probe placement: | Alphanumeric |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C55360 | Microdialysis cerebral analyte lactate pyruvate ratio value | MicrdiaCrbrlAnlytLactPyrRatVal | The ratio of lactate to pyruvate in the cerebral microdialysis analyte | The ratio of lactate to pyruvate in the cerebral microdialysis analyte | L/P ratio: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58748 | Freezing method type | FreezMethdTyp | The method of freezing of the specimen | The method of freezing of the specimen | Method of freezing | Snap-frozen;Slowly cooled;Storage at -80oC;Dry ice-ethanol;Storage at -20oC;Other, specify | Snap-frozen;Slowly cooled;Storage at -80oC;Dry ice-ethanol;Storage at -20oC;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 16:21:48.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C54743 | Specimen biologic source type | SpecmnBioSourcTyp | The type of biologic specimen collection source | The type of biologic specimen collection sourc | Sample source | Biological tissue;Biological fluid;Unknown | Biological tissue;Biological fluid;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C01701 | Lab specimen collection date and time | LabSpecmnCollDateTime | Date (and time if applicable and known) when the specimen was collected | Date (and time if applicable and known) when the specimen was collected | Date and time of sample collection | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
A Consensus Protocol for the Standardization of Cerebrospinal Fluid Collection and Biobanking; Teunissen, C.E., Neurology 2009; 73: 1914-1922. | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-25 08:54:08.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
2004004 | |||||||||
| C10821 | Food last consumed date and time | FoodLstConsmDateTime | Date (and time, if applicable and known) the participant/subject last ate food | Date (and time, if applicable and known) the participant/subject last ate food | Date and time last ate | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples; Rai, A.J., Proteomics 2005, 5, 3262-3277. | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C10823 | Alcohol last consumed date and time | AlcohLastConDateTime | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date last had an alcoholic drink | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
