CDE Detailed Report
Disease: content
Subdomain Name: Laboratory Tests and Biospecimens/Biomarkers
CRF: welcome
Displaying 51 - 79 of 79
Subdomain Name: Laboratory Tests and Biospecimens/Biomarkers
CRF: welcome
Displaying 51 - 79 of 79
| CDE ID | CDE Name | Variable Name | Definition | Short Description | Question Text | Permissible Values | Description | Data Type | Disease Specific Instructions | Disease Specific Reference | Population | Classification (e.g., Core) | Version Number | Version Date | CRF Name (CRF Module / Guidance) | Subdomain Name | Domain Name | Size | Input Restrictions | Min Value | Max Value | Measurement Type | External Id Loinc | External Id Snomed | External Id caDSR | External Id CDISC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C58742 | Shipping conditions type | ShipCondTyp | Indicate the specimen shipping conditions | Indicate the specimen shipping conditions | Shipping conditions | Dry ice;Overnight;Other, specify | Dry ice;Overnight;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:03:28.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Multiple Pre-Defined Values Selected |
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| C54751 | Cerebrospinal fluid collection anatomic site | CSFCollectAnatSite | The anatomic site related to collection of cerebrospinal fluid (CSF) | The anatomic site related to collection of cerebrospinal fluid (CSF | Site of CSF acquisition | Ventricular cistern;Lumbar cistern;Other, specify | Ventricular cistern;Lumbar cistern;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55747 | Specimen insulate shipment box indicator | SpcmnInsulateShipBoxInd | The indicator related to whether the specimen insulated in a shipment box | The indicator related to whether the specimen insulated in a shipment box | Use insulated bio-shipment box: | No;Yes | No;Yes | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58753 | Specimen analysis date and time | SpcmnAnlysisDateTime | Date (and time if applicable and known) when the specimen was analyzed | Date (and time if applicable and known) when the specimen was analyzed | Date and time of analysis | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 17:04:31.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55329 | Specimen storage barcode system used indicator | SpecStrgBarcdSysUsedInd | The indicator related to whether a specimen storage barcode system was used | The indicator related to whether a specimen storage barcode system was used | Samples torage bar code system (automated date/time) method used: | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58722 | Specimen collection position type | SpcmnCollectPosTyp | Indicate the position of the participant/subject during sample collection | Indicate the position of the participant/subject during sample collection | Patient position during sample collection | Seating;Lying;Standing | Seating;Lying;Standing | Alphanumeric |
Choose one |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-07 14:12:41.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55352 | Microdialysate source type | MicrodiaSourcTyp | The free-text field to specify the type of microdialysate specimen source | The free-text field to specify the type of microdialysate specimen source | Composition and source of the microdialysate: | Alphanumeric |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C58743 | Shipping conditions type other text | ShipCondOTH | The free-text field related to other shipping conditions type | The free-text field related to other shipping conditions typ | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 15:29:37.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C54752 | Cerebrospinal fluid collection anatomic site other text | CSFCollectAnatSiteOTH | The free-text field related to other anatomic site related to collection of cerebrospinal fluid (CSF) | The free-text field related to other anatomic site related to collection of cerebrospinal fluid (CSF | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C56123 | Specimen centrifugation performed indicator | SpecCentrifPerfrmdInd | The indicator relating to whether centrifugation was performed on the specimen | The indicator relating to whether centrifugation was performed on the specime | Sample centrifuged | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-06-06 13:23:19.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58754 | Multiplex platform statistical methodology type | MultiplxPlatStatMethdTyp | Indicate the statistical methodology used to address multiple hypothesis testing | Indicate the statistical methodology used to address multiple hypothesis testing | Statistical methodology used to address multiple hypothesis testing | Alphanumeric |
For multiplex platforms (proteomics, metabolomics, luminex assays) |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-11 11:25:52.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C55338 | Specimen freeze thaw cycle prior biomarker assay number | SpcmnFrzThwCycPriorBiomAssaNum | The number of freeze thaw cycles the sample underwent prior to the biomarker assay | The number of freeze thaw cycles the sample underwent prior to the biomarker assay | Number of freeze/thaw cycles the sample went through prior to biomarker assay: | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58723 | Blood collection method type other text | BldCollMthdTypOTH | The free-text field related to 'Blood collection method type' specifying other text | The free-text field related to 'Blood collection method type' specifying other text | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-07 16:39:23.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C55353 | Microdialysate composition type text | MicrodiaCompTypTxt | The free-text field to specify the composition of microdialysate specimen | The free-text field to specify the composition of microdialysate specimen | Composition and source of the microdialysate: | Alphanumeric |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 500 |
Free-Form Entry |
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| C58744 | Specimen ambient light protection indicator | SpcmnAmbntLightProtectInd | Indicate whether the specimen was protected from ambient light | Indicate whether the specimen was protected from ambient light | Sample protected from ambient light | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:33:27.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C01705 | Lab test name | LabTestName | Name representing the lab test performed on body fluid(s) and tissues. Test names are typically comprised of the analyte name, properties (%, Ratio, etc.), the type of body fluid tested, and any special instructions | Name representing the lab test performed on body fluid(s) and tissues. Test names are typically comprised of the analyte name, properties (%, Ratio, etc.), the type of body fluid tested, and any special instructions | Laboratory test(s) conducted | Glucose;Immunoglobulin G (IgG);Oligoclonal Bands;Other, specify | Glucose;Immunoglobulin G (IgG);Oligoclonal Bands;Other, specify | Alphanumeric |
"Indicate the name of each laboratory test that is run on the specimen. Refer to the document entitled, ""Laboratory Tests Permissible Values for Stroke"" for a listing and description of the recommended lab tests." |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 4.00 | 2024-03-18 15:21:17.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
2003746 | |||||||
| C54753 | Specimen collection tube type | SpecimenCollectionTubTyp | Type of tube used for specimen collection | Type of tube used for specimen collectio | Type of collection tubes used | Blood cultures-SPS;Citrate Tube;Serum Tube;Vacutainer SST/Gel Separator Tube;Vacutainer PST;Heparin Tube;Gel Separator Tube with Heparin;EDTA Tube;Fluoride (glucose) Tube;Polypropylene;Other, specify | Blood cultures-SPS;Citrate Tube;Serum Tube;Vacutainer SST/Gel Separator Tube;Vacutainer PST;Heparin Tube;Gel Separator Tube with Heparin;EDTA Tube;Fluoride (glucose) Tube;Polypropylene;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C57923 | Blood collection tube additive type | BloodCollectTubeAdditivTyp | Type of additives used in blood collection tube | Type of additives used in blood collection tube | Additives used to store sample | EDTA;Citrate;Heparin;None;Other, specify | EDTA;Citrate;Heparin;None;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2018-01-15 15:45:04.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Multiple Pre-Defined Values Selected |
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| C58873 | Blood collection method category | BldCollMthdCat | Indicate the method of blood collection | Indicate the method of blood collection | Method of blood collection | Routine venipuncture w/ tourniquet;Routine venipuncture w/o tourniquet;Drawn through peripheral venous catheter;Drawn through central venous catheter;Drawn through PICC (peripherally inserted central catheter);Drawn through peripheral arterial puncture;Drawn through arterial peripheral line;Drawn through arterial central line;Special procedures;Other, specify;Unknown | Routine venipuncture w/ tourniquet;Routine venipuncture w/o tourniquet;Drawn through peripheral venous catheter;Drawn through central venous catheter;Drawn through PICC (peripherally inserted central catheter);Drawn through peripheral arterial puncture;Drawn through arterial peripheral line;Drawn through arterial central line;Special procedures;Other, specify;Unknown | Alphanumeric |
Choose one |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-18 13:53:55.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55340 | Specimen selective inhibitor used indicator | SpcmnSelecvInhibitUsedInd | Indicator of whether or not selective inhibitors were used on the sample | Indicator of whether or not selective inhibitors were used on the sample | Selective inhibitors used (depending on target analyte): | No;Yes | No;Yes | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58724 | Specimen hemolyzed indicator | SpcmnHemolyzInd | Indicate whether the sample was hemolyzed (Gross hemolysis, microscope not required) | Indicate whether the sample was hemolyzed (Gross hemolysis, microscope not required) | Was sample hemolyzed (Gross hemolysis, microscope not required) | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
Choose one |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-07 16:43:52.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55357 | Microdialysis cerebral analyte glucose measurement | MicrodiaCrbrlAnalytGluMeasr | The value of glucose in in the cerebral microdialysis analyte | The value of glucose in in the cerebral microdialysis analyte | Glucose: | Numeric Values |
"For cerebral microdialysis specimens mmol/l" |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58745 | Specimen cooler than room temperature indicator | SpcmnCoolerRoomTempInd | Indicate whether the specimen was kept cooler than room temperature | Indicate whether the specimen was kept cooler than room temperature | Sample kept cooler than room temperature | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:37:29.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C01712 | Lab specimen type | LabSpecmnTyp | Type of specimen collected for the laboratory test | Type of specimen collected for the laboratory test | Type of sample | Venous blood - serum;Venous blood - plasma;Venous blood - platelets;Venous blood - buffy coat;Venous blood - whole;Arterial blood - serum;Arterial blood - plasma;Arterial blood - platelets;Arterial blood - buffy coat;Arterial blood - whole;Newborn cord blood;Urine;CSF;Buccal swab;Brain tissue;Saliva;Amniotic fluid;Placenta;Other, specify;Blood | Venous blood - serum;Venous blood - plasma;Venous blood - platelets;Venous blood - buffy coat;Venous blood - whole;Arterial blood - serum;Arterial blood - plasma;Arterial blood - platelets;Arterial blood - buffy coat;Arterial blood - whole;Newborn cord blood;Urine;Cerebral spinal fluid;Buccal swab;Brain tissue;Saliva;Amniotic fluid;Placenta;Other, specify;Blood | Alphanumeric |
Choose one |
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples; Rai, A.J., Proteomics 2005, 5, 3262-3277. | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-20 10:21:25.65 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C54754 | Specimen collection tube other text | SpecimenCollectionTubOTH | The free-text field related to other tube for specimen collection | The free-text field related to other tube for specimen collectio | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C58407 | Blood collection tube volume value | BloodCollectTubeVolVal | Volume of blood collection tube | Volume of blood collection tube | Volume of collection tube | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2018-01-15 15:14:06.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
1 | 1000 | milliliters | |||||||
| C01701 | Lab specimen collection date and time | LabSpecmnCollDateTime | Date (and time if applicable and known) when the specimen was collected | Date (and time if applicable and known) when the specimen was collected | Date and time of sample collection | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
A Consensus Protocol for the Standardization of Cerebrospinal Fluid Collection and Biobanking; Teunissen, C.E., Neurology 2009; 73: 1914-1922. | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-25 08:54:08.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
2004004 | |||||||||
| C10821 | Food last consumed date and time | FoodLstConsmDateTime | Date (and time, if applicable and known) the participant/subject last ate food | Date (and time, if applicable and known) the participant/subject last ate food | Date and time last ate | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples; Rai, A.J., Proteomics 2005, 5, 3262-3277. | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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| C10823 | Alcohol last consumed date and time | AlcohLastConDateTime | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date last had an alcoholic drink | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
